Transcript: LINC01193:7

Basic information

LNCipedia transcript ID: LINC01193:7 
HGNC Gene Symbol: LINC01193    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1193
Ensembl Gene ID: ENSG00000258710
Ensembl Transcript ID: ENST00000567916
Location (hg38): chr15:20990659-20993271
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567916.1; RP11-810K23.3-005; OTTHUMT00000431551.1; NONHSAT040679
Alternative gene names: ENSG00000258710.3; RP11-810K23.3; OTTHUMG00000171709.3; CT60; ENSG00000258710.7; LINC01193; LOC348120


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.5885 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01193:7 no no no no

Available literature

  1. Chen (2005), Identification of cancer/testis-antigen genes by massively parallel signature sequencing., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR4M2-3:5
4.0 LINC01193:7
4.1 LINC01193:7
5.0 LINC01193:7
5.1 LINC01193:7
5.2 LINC01193:7