Transcript: LINC01198:11

Basic information

LNCipedia transcript ID: LINC01198:11 
HGNC Gene Symbol: LINC01198    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1198
Ensembl Gene ID: ENSG00000231817
Ensembl Transcript ID: ENST00000593640
Location (hg38): chr13:46455369-46464819
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT033652; ENST00000593640.1; ENST00000593640.5
Alternative gene names: ENSG00000231817.3; RP11-189B4.6; ENSG00000231817.7; LINC01198;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 51.288 non-coding 
CPAT coding probability 37.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01198:11 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0226L-1:11
4.0 LINC01198:11
4.1 LINC01198:11
5.0 LINC01198:11
5.1 LINC01198:11
5.2 LINC01198:11