Transcript: LINC01198:2

Basic information

LNCipedia transcript ID: LINC01198:2 
HGNC Gene Symbol: LINC01198    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1198
Ensembl Gene ID: ENSG00000231817
Ensembl Transcript ID: ENST00000598084
Location (hg38): chr13:46455135-46486506
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 881 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000598084.2; ENST00000598084.6
Alternative gene names: ENSG00000231817.3; RP11-189B4.6; ENSG00000231817.7; LINC01198;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.2458 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01198:2 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0226L-1:2
4.0 LINC01198:2
4.1 LINC01198:2
5.0 LINC01198:2
5.1 LINC01198:2
5.2 LINC01198:2