Transcript: LINC01205:1

Basic information

LNCipedia transcript ID: LINC01205:1 
HGNC Gene Symbol: LINC01205    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1205
Ensembl Gene ID: ENSG00000228980
Ensembl Transcript ID: ENST00000497996
RefSeq ID: NR_109841
Location (hg38): chr3:109409990-109495167
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1493 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000497996; ENST00000497996.1; RP11-702L6.4-002; OTTHUMT00000353892.1; NR_109841; NR_109841.1
Alternative gene names: ENSG00000228980; RP11-702L6.4; ENSG00000228980.3; OTTHUMG00000159217.1; LINC01205;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.18 non-coding 
CPAT coding probability 10.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01205:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAT1-4:1
3.1 lnc-TRAT1-5:1
4.0 LINC01205:1
4.1 LINC01205:1
5.0 LINC01205:1
5.1 LINC01205:1
5.2 LINC01205:1