Transcript: LINC01206:9

Basic information

LNCipedia transcript ID: LINC01206:9 
LNCipedia gene ID: LINC01206
Location (hg38): chr3:181952379-182010678
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9544 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000482787.2; RP11-416O18.1-001; OTTHUMT00000350465.2
Alternative gene names: ENSG00000242512.2; RP11-416O18.1; OTTHUMG00000158238.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
EGRKWVEFMALDMK 92.3076923076923% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.6882 non-coding 
CPAT coding probability 10.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01206:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOX2-2:3
4.0 LINC01206:9
4.1 LINC01206:9
5.0 LINC01206:9
5.1 LINC01206:9
5.2 LINC01206:9