Transcript: LINC01209:1

Basic information

LNCipedia transcript ID: LINC01209:1 
HGNC Gene Symbol: LINC01209    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1209
Ensembl Gene ID: ENSG00000228308
Ensembl Transcript ID: ENST00000451289
RefSeq ID: NR_110819
Location (hg38): chr3:176814155-176817001
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2400 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000451289; ENST00000451289.1; RP11-255G21.1-001; OTTHUMT00000348371.1; NONHSAT093332; NR_110819.1
Alternative gene names: ENSG00000228308; RP11-255G21.1; ENSG00000228308.1; OTTHUMG00000157300.1; LINC01209;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.9793 non-coding 
CPAT coding probability 6.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01209:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBL1XR1-2:1
3.1 lnc-TBL1XR1-2:1
4.0 LINC01209:1
4.1 LINC01209:1
5.0 LINC01209:1
5.1 LINC01209:1
5.2 LINC01209:1