Transcript: LINC01213:1

Basic information

LNCipedia transcript ID: LINC01213:1 
HGNC Gene Symbol: LINC01213    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1213
Ensembl Gene ID: ENSG00000244541
Ensembl Transcript ID: ENST00000472890
Location (hg38): chr3:150238519-150240203
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 472 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005621; ENST00000472890; ENST00000472890.1; RP11-167H9.6-002; OTTHUMT00000357111.1; NONHSAT092681; ENST00000472890.5
Alternative gene names: XLOC_002871; linc-TSC22D2-1; ENSG00000244541; RP11-167H9.6; ENSG00000244541.1; OTTHUMG00000159737.1; ENSG00000244541.5; LINC01213;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.5368 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01213:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSC22D2-2:1
3.1 lnc-TSC22D2-2:1
4.0 LINC01213:1
4.1 LINC01213:1
5.0 LINC01213:1
5.1 LINC01213:1
5.2 LINC01213:1