Transcript: LINC01216:1

Basic information

LNCipedia transcript ID: LINC01216:1 
HGNC Gene Symbol: LINC01216    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1216
Ensembl Gene ID: ENSG00000250223
Ensembl Transcript ID: ENST00000515728
RefSeq ID: NR_046811
Location (hg38): chr4:100660279-100675113
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 824 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007798; ENST00000515728.1; EMCN-IT3-001; OTTHUMT00000363588.2; NONHSAT097565; NR_046811; NR_046811.1
Alternative gene names: XLOC_004024; linc-EMCN-2; ENSG00000250223.1; EMCN-IT3; OTTHUMG00000161053.2; LINC01216;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.3723 non-coding 
CPAT coding probability 4.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01216:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP3CA-3:1
3.1 lnc-PPP3CA-3:1
4.0 LINC01216:1
4.1 LINC01216:1
5.0 LINC01216:1
5.1 LINC01216:1
5.2 LINC01216:1