Transcript: LINC01226:1

Basic information

LNCipedia transcript ID: LINC01226:1 
HGNC Gene Symbol: LINC01226    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1226
RefSeq ID: NR_027085
Location (hg38): chr1:31518435-31524245
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2741 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000005; ENST00000412068; ENST00000412068.1; RP11-439L8.4-001; OTTHUMT00000011056.1; NONHSAT002103; NR_027085; NR_027085.1
Alternative gene names: XLOC_000123; linc-TINAGL1; ENSG00000223907; RP11-439L8.4; ENSG00000223907.1; OTTHUMG00000003882.2; LINC01226;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9919 non-coding 
CPAT coding probability 28.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01226:1 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TINAGL1-1:1
3.1 lnc-TINAGL1-1:1
4.0 LINC01226:1
4.1 LINC01226:1
5.0 LINC01226:1
5.1 LINC01226:1
5.2 LINC01226:1