Transcript: LINC01226:11

Basic information

LNCipedia transcript ID: LINC01226:11 
LNCipedia gene ID: LINC01226
Ensembl Gene ID: ENSG00000284543
Ensembl Transcript ID: ENST00000639946
Location (hg38): chr1:31538044-31540769
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 354 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563427.1; ENST00000639946.1
Alternative gene names: ENSG00000260636.1; RP11-439L8.5; ; ENSG00000284543.1; LINC01226


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -80.7044 non-coding 
CPAT coding probability 5.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01226:11 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TINAGL1-3:1
4.1 LINC01226:11
5.0 LINC01226:11
5.1 LINC01226:11
5.2 LINC01226:11