Transcript: LINC01226:15

Basic information

LNCipedia transcript ID: LINC01226:15 
LNCipedia gene ID: LINC01226
Ensembl Gene ID: ENSG00000284543
Ensembl Transcript ID: ENST00000640157
Location (hg38): chr1:31506285-31522358
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000640157.1
Alternative gene names: ENSG00000284543.1; LINC01226


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -89.4154 non-coding 
CPAT coding probability 25.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01226:15 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC01226:15
5.1 LINC01226:15
5.2 LINC01226:15