Transcript: LINC01226:2

Basic information

LNCipedia transcript ID: LINC01226:2 
LNCipedia gene ID: LINC01226
Ensembl Gene ID: ENSG00000284543
Ensembl Transcript ID: ENST00000640630
Location (hg38): chr1:31522363-31523589
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1122 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000180; ENST00000417514; ENST00000417514.1; RP11-439L8.4-002; OTTHUMT00000091360.1; NONHSAT002104; ENST00000640630.1
Alternative gene names: XLOC_000123; linc-TINAGL1; ENSG00000223907; RP11-439L8.4; ENSG00000223907.1; OTTHUMG00000003882.2; LINC01226; ; ENSG00000284543.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.8026 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01226:2 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TINAGL1-1:2
3.1 lnc-TINAGL1-1:2
4.0 LINC01226:2
4.1 LINC01226:2
5.0 LINC01226:2
5.1 LINC01226:2
5.2 LINC01226:2