Transcript: LINC01226:3

Basic information

LNCipedia transcript ID: LINC01226:3 
LNCipedia gene ID: LINC01226
Location (hg38): chr1:31506240-31508566
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1166 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000418618; ENST00000418618.1; RP11-439L8.3-001; OTTHUMT00000011054.1
Alternative gene names: ENSG00000228682; RP11-439L8.3; ENSG00000228682.2; OTTHUMG00000003880.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.968 non-coding 
CPAT coding probability 93.93% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01226:3 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERINC2-1:1
3.1 lnc-SERINC2-1:1
4.0 lnc-SERINC2-1:1
4.1 LINC01226:3
5.0 LINC01226:3
5.1 LINC01226:3
5.2 LINC01226:3