Transcript: LINC01227:1

Basic information

LNCipedia transcript ID: LINC01227:1 
HGNC Gene Symbol: LINC01227    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1227
Ensembl Gene ID: ENSG00000260737
Ensembl Transcript ID: ENST00000561719
RefSeq ID: NR_104666
Location (hg38): chr16:80567103-80572808
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 755 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000561719.1; RP11-18F14.1-005; OTTHUMT00000434723.1; NONHSAT143896; NR_104666; ENST00000561719.5; NR_104666.1
Alternative gene names: ENSG00000260737.1; RP11-18F14.1; OTTHUMG00000176267.2; ENSG00000260737.5; LINC01227;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.4526 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01227:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDYL2-2:1
4.0 LINC01227:1
4.1 LINC01227:1
5.0 LINC01227:1
5.1 LINC01227:1
5.2 LINC01227:1