Transcript: LINC01227:20

Basic information

LNCipedia transcript ID: LINC01227:20 
LNCipedia gene ID: LINC01227
Ensembl Gene ID: ENSG00000260183
Ensembl Transcript ID: ENST00000568275
Location (hg38): chr16:80547842-80552514
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 534 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568275.1; RP11-109P11.1-001; OTTHUMT00000434722.1; NONHSAT143891
Alternative gene names: ENSG00000260183.1; RP11-109P11.1; OTTHUMG00000177003.1; ; AC108097.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.1133 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01227:20 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDYL2-3:1
4.0 lnc-CDYL2-3:1
4.1 LINC01227:20
5.0 LINC01227:20
5.1 LINC01227:20
5.2 LINC01227:20