Transcript: LINC01227:3

Basic information

LNCipedia transcript ID: LINC01227:3 
HGNC Gene Symbol: LINC01227    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1227
Ensembl Gene ID: ENSG00000260737
Ensembl Transcript ID: ENST00000567317
Location (hg38): chr16:80566794-80569687
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1338 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507138; TCONS_00024275; ENST00000567317.1; RP11-18F14.1-001; OTTHUMT00000431699.1; NONHSAT143894; ENST00000567317.5
Alternative gene names: ENSG00000250904; XLOC_012020; linc-MAF-5; ENSG00000260737.1; RP11-18F14.1; OTTHUMG00000176267.2; ENSG00000260737.5; LINC01227;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.8965 non-coding 
CPAT coding probability 4.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01227:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDYL2-1:1
3.1 lnc-CDYL2-2:2
4.0 LINC01227:3
4.1 LINC01227:3
5.0 LINC01227:3
5.1 LINC01227:3
5.2 LINC01227:3