Transcript: LINC01227:4

Basic information

LNCipedia transcript ID: LINC01227:4 
LNCipedia gene ID: LINC01227
Location (hg38): chr16:80567044-80569684
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024741; NONHSAT143895
Alternative gene names: XLOC_012020; linc-MAF-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.4266 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01227:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDYL2-1:2
3.1 lnc-CDYL2-2:3
4.0 LINC01227:4
4.1 LINC01227:4
5.0 LINC01227:4
5.1 LINC01227:4
5.2 LINC01227:4