Transcript: LINC01229:10

Basic information

LNCipedia transcript ID: LINC01229:10 
HGNC Gene Symbol: LINC01229    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1229
Ensembl Gene ID: ENSG00000260876
Ensembl Transcript ID: ENST00000561510
Location (hg38): chr16:79713847-79799090
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1494 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561510.1; RP11-345M22.1-002; OTTHUMT00000434548.1; NONHSAT143858; ENST00000561510.5
Alternative gene names: ENSG00000260876.1; RP11-345M22.1; OTTHUMG00000176975.1; ENSG00000260876.5; LINC01229; TCONS_00024480


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.0474 non-coding 
CPAT coding probability 34.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01229:10 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WWOX-2:9
4.0 LINC01229:10
4.1 LINC01229:10
5.0 LINC01229:10
5.1 LINC01229:10
5.2 LINC01229:10