Transcript: LINC01229:15

Basic information

LNCipedia transcript ID: LINC01229:15 
HGNC Gene Symbol: LINC01229    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1229
Ensembl Gene ID: ENSG00000260876
Ensembl Transcript ID: ENST00000568751
RefSeq ID: NR_104660
Location (hg38): chr16:79770471-79801343
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 720 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000568751.1; RP11-345M22.1-003; OTTHUMT00000434549.1; NONHSAT143871; NR_104660; NR_104660.1
Alternative gene names: ENSG00000260876.1; RP11-345M22.1; OTTHUMG00000176975.1; ENSG00000260876.5; LINC01229; TCONS_00024480


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.6939 non-coding 
CPAT coding probability 35.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01229:15 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WWOX-2:11
4.0 LINC01229:15
4.1 LINC01229:15
5.0 LINC01229:15
5.1 LINC01229:15
5.2 LINC01229:15