Transcript: LINC01229:16

Basic information

LNCipedia transcript ID: LINC01229:16 
LNCipedia gene ID: LINC01229
RefSeq ID: NR_104661
Location (hg38): chr16:79795249-79799090
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 987 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104661; NR_104661.1
Alternative gene names: TCONS_00024480; LINC01229


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.6711 non-coding 
CPAT coding probability 35.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01229:16 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WWOX-2:17
4.0 LINC01229:16
4.1 LINC01229:16
5.0 LINC01229:16
5.1 LINC01229:16
5.2 LINC01229:16