Transcript: LINC01229:17

Basic information

LNCipedia transcript ID: LINC01229:17 
LNCipedia gene ID: LINC01229
Location (hg38): chr16:79796461-79800270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2012 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT143872; FPKM1_group_11976_transcript_2
Alternative gene names: TCONS_00024480


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.7762 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01229:17 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WWOX-2:18
4.0 LINC01229:17
4.1 LINC01229:17
5.0 LINC01229:17
5.1 LINC01229:17
5.2 LINC01229:17