Transcript: LINC01229:6

Basic information

LNCipedia transcript ID: LINC01229:6 
LNCipedia gene ID: LINC01229
Location (hg38): chr16:79676084-79728920
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 849 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024893; NONHSAT143854
Alternative gene names: XLOC_011797; linc-DYNLRB2-3; TCONS_00024480


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.8435 non-coding 
CPAT coding probability 6.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01229:6 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WWOX-2:5
3.1 lnc-WWOX-2:5
4.0 LINC01229:6
4.1 LINC01229:6
5.0 LINC01229:6
5.1 LINC01229:6
5.2 LINC01229:6