Transcript: LINC01233:1

Basic information

LNCipedia transcript ID: LINC01233:1 
HGNC Gene Symbol: LINC01233    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1233
Ensembl Gene ID: ENSG00000269364
Ensembl Transcript ID: ENST00000598832
RefSeq ID: NR_110664
Location (hg38): chr19:22532626-22533494
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000598832.1; NR_110664; NR_110664.1
Alternative gene names: ENSG00000269364.1; CTC-457E21.2; LINC01233; XLOC_013014


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.2032 non-coding 
CPAT coding probability 5.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01233:1 no no no no

Available literature

  1. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF492-1:4
4.0 LINC01233:1
4.1 LINC01233:1
5.0 LINC01233:1
5.1 LINC01233:1
5.2 LINC01233:1