Transcript: LINC01233:4

Basic information

LNCipedia transcript ID: LINC01233:4 
HGNC Gene Symbol: LINC01233    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1233
Ensembl Gene ID: ENSG00000269364
Ensembl Transcript ID: ENST00000601708
Location (hg38): chr19:22532671-22533412
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT063797; ENST00000601708.1
Alternative gene names: ENSG00000269364.1; CTC-457E21.2; LINC01233; XLOC_013014


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.2315 non-coding 
CPAT coding probability 18.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01233:4 no no no no

Available literature

  1. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF492-1:5
4.0 LINC01233:4
4.1 LINC01233:4
5.0 LINC01233:4
5.1 LINC01233:4
5.2 LINC01233:4