Transcript: LINC01233:7

Basic information

LNCipedia transcript ID: LINC01233:7 
HGNC Gene Symbol: LINC01233    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1233
Ensembl Gene ID: ENSG00000269364
Ensembl Transcript ID: ENST00000594200
Location (hg38): chr19:22532777-22533491
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT063800; ENST00000594200.1
Alternative gene names: ENSG00000269364.1; CTC-457E21.2; LINC01233; XLOC_013014


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5452 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01233:7 no no no no

Available literature

  1. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF492-1:7
4.0 LINC01233:7
4.1 LINC01233:7
5.0 LINC01233:7
5.1 LINC01233:7
5.2 LINC01233:7