Transcript: LINC01234:1

Basic information

LNCipedia transcript ID: LINC01234:1 
HGNC Gene Symbol: LINC01234    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1234
Ensembl Gene ID: ENSG00000249550
Ensembl Transcript ID: ENST00000547963
RefSeq ID: NR_110025
Location (hg38): chr12:113744577-113773683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2088 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000547963; TCONS_00020222; ENST00000547963.1; RP11-438N16.1-002; OTTHUMT00000405246.1; NONHSAT030854; NR_110025; NR_110025.1
Alternative gene names: ENSG00000249550; XLOC_010204; linc-LHX5; RP11-438N16.1; ENSG00000249550.2; OTTHUMG00000169644.1; ENSG00000249550.6; LINC01234; onco-lncRNA-32


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4236 non-coding 
CPAT coding probability 5.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01234:1 no no no no

Available literature

  1. Gu (2017), Identification of aberrantly expressed long non-coding RNAs in stomach adenocarcinoma., Oncotarget
  2. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget
  3. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  4. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RBM19-1:1
3.1 lnc-RBM19-1:2
4.0 LINC01234:1
4.1 LINC01234:1
5.0 LINC01234:1
5.1 LINC01234:1
5.2 LINC01234:1