Transcript: LINC01234:2

Basic information

LNCipedia transcript ID: LINC01234:2 
LNCipedia gene ID: LINC01234
Location (hg38): chr12:113751025-113773683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1500 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020223; NONHSAT030857
Alternative gene names: XLOC_010204; linc-LHX5; onco-lncRNA-32


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5632 non-coding 
CPAT coding probability 32.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01234:2 no no no no

Available literature

  1. Gu (2017), Identification of aberrantly expressed long non-coding RNAs in stomach adenocarcinoma., Oncotarget
  2. Guo (2017), Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2., Oncotarget
  3. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  4. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RBM19-1:2
3.1 lnc-RBM19-1:1
4.0 LINC01234:2
4.1 LINC01234:2
5.0 LINC01234:2
5.1 LINC01234:2
5.2 LINC01234:2