Transcript: LINC01238:13

Basic information

LNCipedia transcript ID: LINC01238:13 
HGNC Gene Symbol: LINC01238    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1238
Ensembl Gene ID: ENSG00000237940
Ensembl Transcript ID: ENST00000451070
Location (hg38): chr2:241972038-241974529
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 599 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451070; ENST00000451070.1; AC093642.3-003; OTTHUMT00000322414.1; NONHSAT078013
Alternative gene names: ENSG00000237940; AC093642.3; ENSG00000237940.2; OTTHUMG00000151373.1; ENSG00000237940.3; LINC01238


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.3077 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01238:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXXC11-2:3
3.1 lnc-CXXC11-2:4
4.0 lnc-CXXC11-2:4
4.1 lnc-CXXC11-2:4
5.0 lnc-CXXC11-2:4
5.1 LINC01238:7
5.2 LINC01238:13