Transcript: LINC01238:8

Basic information

LNCipedia transcript ID: LINC01238:8 
HGNC Gene Symbol: LINC01238    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1238
Ensembl Gene ID: ENSG00000237940
Ensembl Transcript ID: ENST00000429456
RefSeq ID: NR_110592
Location (hg38): chr2:241970683-241977276
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2170 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000429456; ENST00000429456.1; AC093642.3-001; OTTHUMT00000322412.1; NONHSAT078008; NR_110592; NR_110592.1
Alternative gene names: ENSG00000237940; AC093642.3; ENSG00000237940.2; OTTHUMG00000151373.1; ENSG00000237940.3; LINC01238; LOC102723927


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.2431 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01238:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXXC11-2:1
3.1 lnc-CXXC11-2:1
4.0 lnc-CXXC11-2:1
4.1 lnc-CXXC11-2:1
5.0 lnc-CXXC11-2:1
5.1 LINC01238:2
5.2 LINC01238:8