Transcript: LINC01239:2

Basic information

LNCipedia transcript ID: LINC01239:2 
LNCipedia gene ID: LINC01239
Location (hg38): chr9:22646109-22688454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2949 bp
Exons: 5
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT130441; FPKM1_group_32814_transcript_6
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.7089 non-coding 
CPAT coding probability 95.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01239:2 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMRTA1-1:2
4.0 LINC01239:2
4.1 LINC01239:2
5.0 LINC01239:2
5.1 LINC01239:2
5.2 LINC01239:2