Transcript: LINC01239:7

Basic information

LNCipedia transcript ID: LINC01239:7 
LNCipedia gene ID: LINC01239
Ensembl Gene ID: ENSG00000224549
Ensembl Transcript ID: ENST00000448570
Location (hg38): chr9:22767175-22768316
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448570; ENST00000448570.1; RP11-370B11.3-001; OTTHUMT00000051937.1; NONHSAT130450
Alternative gene names: ENSG00000224549; RP11-370B11.3; ENSG00000224549.1; OTTHUMG00000019695.1; ; AC017067.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.1953 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01239:7 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMRTA1-1:1
3.1 lnc-DMRTA1-1:1
4.0 LINC01239:7
4.1 LINC01239:7
5.0 LINC01239:7
5.1 LINC01239:7
5.2 LINC01239:7