Transcript: LINC01243:1

Basic information

LNCipedia transcript ID: LINC01243:1 
HGNC Gene Symbol: LINC01243    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1243
Ensembl Gene ID: ENSG00000260720
Ensembl Transcript ID: ENST00000562065
RefSeq ID: NR_135134
Location (hg38): chr9:31371611-31381490
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 721 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000562065.1; RP11-271O3.1-001; OTTHUMT00000430272.1; NONHSAT130652; NR_135134.1
Alternative gene names: ENSG00000260720.1; RP11-271O3.1; OTTHUMG00000175494.1; LINC01243;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.6327 non-coding 
CPAT coding probability 4.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01243:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX58-2:1
4.0 LINC01243:1
4.1 LINC01243:1
5.0 LINC01243:1
5.1 LINC01243:1
5.2 LINC01243:1