Transcript: LINC01249:1

Basic information

LNCipedia transcript ID: LINC01249:1 
LNCipedia gene ID: LINC01249
RefSeq ID: NR_034134
Location (hg38): chr2:4628218-4656222
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2674 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002658; NONHSAT068789; NR_034134; NR_034134.1
Alternative gene names: XLOC_001956; linc-RNASEH1-5; ; LINC01249


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.1551 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01249:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNASEH1-4:1
3.1 lnc-RNASEH1-6:1
4.0 LINC01249:1
4.1 LINC01249:1
5.0 LINC01249:1
5.1 LINC01249:1
5.2 LINC01249:1