Transcript: LINC01257:5

Basic information

LNCipedia transcript ID: LINC01257:5 
HGNC Gene Symbol: LINC01257    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1257
Ensembl Gene ID: ENSG00000204603
Ensembl Transcript ID: ENST00000536191
Location (hg38): chr12:131207207-131209515
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536191; ENST00000536191.1; RP11-638F5.1-002; OTTHUMT00000399383.1; NONHSAT032004
Alternative gene names: ENSG00000204603; RP11-638F5.1; ENSG00000204603.2; OTTHUMG00000168350.1; ENSG00000204603.6; LINC01257;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2187 non-coding 
CPAT coding probability 6.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01257:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR133-1:5
3.1 lnc-GPR133-1:5
4.0 LINC01257:5
4.1 LINC01257:5
5.0 LINC01257:5
5.1 LINC01257:5
5.2 LINC01257:5