Transcript: LINC01262:1

Basic information

LNCipedia transcript ID: LINC01262:1 
HGNC Gene Symbol: LINC01262    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1262
Ensembl Gene ID: ENSG00000250739
Ensembl Transcript ID: ENST00000513681
Location (hg38): chr4:189659605-189661486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 879 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513681; ENST00000513681.1; RP11-462G22.1-001; OTTHUMT00000360255.1; NONHSAT099793
Alternative gene names: ENSG00000250739; RP11-462G22.1; ENSG00000250739.1; OTTHUMG00000160329.1; LINC01262; TCONS_l2_00021807


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.6943 non-coding 
CPAT coding probability 8.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01262:1 no no no no

Available literature

  1. Gui (2015), Altered microRNA profiles in cerebrospinal fluid exosome in Parkinson disease and Alzheimer disease., Oncotarget
  2. Soreq (2014), Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing., PLoS Comput. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG1-3:1
3.1 lnc-FRG1-3:1
4.0 LINC01262:1
4.1 LINC01262:1
5.0 LINC01262:1
5.1 LINC01262:1
5.2 LINC01262:1