Transcript: LINC01264:1

Basic information

LNCipedia transcript ID: LINC01264:1 
HGNC Gene Symbol: LINC01264    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1264
Ensembl Gene ID: ENSG00000229630
Ensembl Transcript ID: ENST00000431395
RefSeq ID: NR_126352
Location (hg38): chr10:42979017-42981507
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017958; ENST00000431395; ENST00000431395.1; RP11-124O11.2-001; OTTHUMT00000047692.1; NONHSAT012937; NR_126352; NR_126352.1
Alternative gene names: XLOC_008790; linc-ZNF33B-2; ENSG00000229630; RP11-124O11.2; ENSG00000229630.1; OTTHUMG00000018022.1; LINC01264


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.5558 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01264:1 no no no no

Available literature

  1. Shi (2014), The role of PinX1 in growth control of breast cancer cells and its potential molecular mechanism by mRNA and lncRNA expression profiles screening., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASGEF1A-1:1
3.1 lnc-RASGEF1A-1:1
4.0 LINC01264:1
4.1 LINC01264:1
5.0 LINC01264:1
5.1 LINC01264:1
5.2 LINC01264:1