Transcript: LINC01270:1

Basic information

LNCipedia transcript ID: LINC01270:1 
HGNC Gene Symbol: LINC01270    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1270
Ensembl Gene ID: ENSG00000203999
Ensembl Transcript ID: ENST00000371639
Location (hg38): chr20:50292720-50314922
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2281 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000371639; ENST00000371639.3; RP11-290F20.1-001; OTTHUMT00000079678.1; NONHSAT080290; ENST00000371639.7
Alternative gene names: ENSG00000203999; RP11-290F20.1; ENSG00000203999.4; OTTHUMG00000032719.1; ENSG00000203999.8; LINC01270;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.5429 non-coding 
CPAT coding probability 16.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01270:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEBPB-7:1
3.1 lnc-CEBPB-7:1
4.0 LINC01270:1
4.1 LINC01270:1
5.0 LINC01270:1
5.1 LINC01270:1
5.2 LINC01270:1