Transcript: LINC01270:2

Basic information

LNCipedia transcript ID: LINC01270:2 
LNCipedia gene ID: LINC01270
RefSeq ID: NR_034124
Location (hg38): chr20:50292720-50314919
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2278 bp
Exons: 5
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027836; NR_034124; NR_034124.1
Alternative gene names: XLOC_013560; linc-PTPN1-2; ; LINC01270


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.5429 non-coding 
CPAT coding probability 16.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01270:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEBPB-7:2
3.1 lnc-CEBPB-7:2
4.0 LINC01270:2
4.1 LINC01270:2
5.0 LINC01270:2
5.1 LINC01270:2
5.2 LINC01270:2