Transcript: LINC01273:9

Basic information

LNCipedia transcript ID: LINC01273:9 
HGNC Gene Symbol: LINC01273    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1273
Ensembl Gene ID: ENSG00000231742
Ensembl Transcript ID: ENST00000427333
Location (hg38): chr20:50172550-50173370
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027947; ENST00000427333; ENST00000427333.1; RP11-112L6.4-002; OTTHUMT00000079677.1; NONHSAT080280; ENST00000427333.5
Alternative gene names: XLOC_013559; linc-CEBPB-1; ENSG00000231742; RP11-112L6.4; ENSG00000231742.1; OTTHUMG00000032718.1; ENSG00000231742.5; LINC01273;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.9667 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01273:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CEBPB-1:4
3.1 lnc-CEBPB-1:4
4.0 LINC01273:9
4.1 LINC01273:9
5.0 LINC01273:9
5.1 LINC01273:9
5.2 LINC01273:9