Transcript: LINC01281:1

Basic information

LNCipedia transcript ID: LINC01281:1 
HGNC Gene Symbol: LINC01281    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1281
Ensembl Gene ID: ENSG00000235304
Ensembl Transcript ID: ENST00000448597
RefSeq ID: NR_038968
Location (hg38): chrX:39304956-39327362
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1773 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000448597; ENST00000448597.1; RP11-265P11.2-001; OTTHUMT00000060659.2; NONHSAT136667; NR_038968; NR_038968.1
Alternative gene names: ENSG00000235304; RP11-265P11.2; ENSG00000235304.1; OTTHUMG00000024095.2; LINC01281;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.2826 non-coding 
CPAT coding probability 15.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01281:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCOR-3:1
3.1 lnc-BCOR-4:1
4.0 LINC01281:1
4.1 LINC01281:1
5.0 LINC01281:1
5.1 LINC01281:1
5.2 LINC01281:1