Transcript: LINC01282:1

Basic information

LNCipedia transcript ID: LINC01282:1 
HGNC Gene Symbol: LINC01282    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1282
Ensembl Gene ID: ENSG00000236747
Ensembl Transcript ID: ENST00000431646
RefSeq ID: NR_110385
Location (hg38): chrX:39367285-39391774
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 880 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017053; ENST00000431646; ENST00000431646.1; RP11-157D23.1-001; OTTHUMT00000060660.2; NONHSAT136669; NR_110385; NR_110385.1
Alternative gene names: XLOC_008143; linc-RPGR-3; ENSG00000236747; RP11-157D23.1; ENSG00000236747.1; OTTHUMG00000024096.2; LINC01282;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.8714 non-coding 
CPAT coding probability 7.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01282:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCOR-2:1
3.1 lnc-BCOR-3:1
4.0 LINC01282:1
4.1 LINC01282:1
5.0 LINC01282:1
5.1 LINC01282:1
5.2 LINC01282:1