Transcript: LINC01290:1

Basic information

LNCipedia transcript ID: LINC01290:1 
HGNC Gene Symbol: LINC01290    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1290
Ensembl Gene ID: ENSG00000260468
Ensembl Transcript ID: ENST00000566787
Location (hg38): chr16:10514842-10528202
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 502 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566787.1; RP11-27M24.3-001; OTTHUMT00000435303.1; NONHSAT140510
Alternative gene names: ENSG00000260468.1; RP11-27M24.3; OTTHUMG00000177103.1; LINC01290;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.7776 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01290:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EMP2-1:1
4.0 LINC01290:1
4.1 LINC01290:1
5.0 LINC01290:1
5.1 LINC01290:1
5.2 LINC01290:1