Transcript: LINC01290:2

Basic information

LNCipedia transcript ID: LINC01290:2 
LNCipedia gene ID: LINC01290
Location (hg38): chr16:10514967-10526091
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 399 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024576; NONHSAT140511
Alternative gene names: XLOC_011872; linc-GRIN2A;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.5878 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01290:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EMP2-1:1
3.1 lnc-EMP2-1:2
4.0 LINC01290:2
4.1 LINC01290:2
5.0 LINC01290:2
5.1 LINC01290:2
5.2 LINC01290:2