Transcript: LINC01297:5

Basic information

LNCipedia transcript ID: LINC01297:5 
LNCipedia gene ID: LINC01297
Location (hg38): chr14:19344474-19345683
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 532 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000550892; ENST00000550892.1; CTD-2311B13.7-004; OTTHUMT00000409456.1; NONHSAT035524
Alternative gene names: ENSG00000257931; CTD-2311B13.7; ENSG00000257931.1; OTTHUMG00000170514.1; ENSG00000257931.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.1986 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01297:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTEM-1:3
3.1 lnc-POTEM-1:3
4.0 LINC01297:5
4.1 LINC01297:5
5.0 LINC01297:5
5.1 LINC01297:5
5.2 LINC01297:5