Transcript: LINC01300:2

Basic information

LNCipedia transcript ID: LINC01300:2 
HGNC Gene Symbol: LINC01300    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1300
Ensembl Gene ID: ENSG00000253595
Ensembl Transcript ID: ENST00000521073
RefSeq ID: NR_024441
Location (hg38): chr8:141340549-141344621
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 796 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000521073.1; CTD-3064M3.1-001; OTTHUMT00000378965.1; NONHSAT129421; NR_024441; ENST00000521073.5; NR_024441.1
Alternative gene names: ENSG00000253595.1; CTD-3064M3.1; OTTHUMG00000164482.1; ENSG00000253595.5; LINC01300;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.3476 non-coding 
CPAT coding probability 22.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01300:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTP4A3-2:1
4.0 LINC01300:2
4.1 LINC01300:2
5.0 LINC01300:2
5.1 LINC01300:2
5.2 LINC01300:2