Transcript: LINC01303:29

Basic information

LNCipedia transcript ID: LINC01303:29 
HGNC Gene Symbol: LINC01303    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1303
Ensembl Gene ID: ENSG00000250548
Ensembl Transcript ID: ENST00000508827
Location (hg38): chr14:61556320-61570653
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5103 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508827; TCONS_00022412; ENST00000508827.1; RP11-47I22.2-001; OTTHUMT00000413998.1; NONHSAT037267
Alternative gene names: ENSG00000250548; XLOC_011047; linc-TMEM30B; RP11-47I22.2; ENSG00000250548.2; OTTHUMG00000171534.1; ENSG00000250548.6; AL355916.1; LINC01303


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.2173 non-coding 
CPAT coding probability 6.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01303:29 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM30B-2:4
3.1 lnc-TMEM30B-3:4
4.0 lnc-TMEM30B-3:4
4.1 lnc-TMEM30B-3:4
5.0 lnc-TMEM30B-3:4
5.1 LINC01303:7
5.2 LINC01303:29