Transcript: LINC01305:1

Basic information

LNCipedia transcript ID: LINC01305:1 
HGNC Gene Symbol: LINC01305    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1305
Ensembl Gene ID: ENSG00000231453
Ensembl Transcript ID: ENST00000420866
RefSeq ID: NR_038897
Location (hg38): chr2:174326027-174330643
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3123 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000420866; TCONS_00003051; ENST00000420866.1; AC018470.4-001; OTTHUMT00000334113.1; NONHSAT075555; NR_038897.1
Alternative gene names: ENSG00000231453; XLOC_001759; linc-SP9-1; AC018470.4; ENSG00000231453.1; OTTHUMG00000154148.1; LINC01305;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.7229 non-coding 
CPAT coding probability 5.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01305:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SP9-1:1
3.1 lnc-SP9-1:1
4.0 LINC01305:1
4.1 LINC01305:1
5.0 LINC01305:1
5.1 LINC01305:1
5.2 LINC01305:1