Transcript: LINC01307:3

Basic information

LNCipedia transcript ID: LINC01307:3 
HGNC Gene Symbol: LINC01307    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1307
Ensembl Gene ID: ENSG00000231671
Ensembl Transcript ID: ENST00000454466
Location (hg38): chr1:101323337-101350176
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 260 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000261; ENST00000454466; ENST00000454466.1; RP11-157N3.1-003; OTTHUMT00000029907.1; NONHSAT004856
Alternative gene names: XLOC_000319; linc-RNPC3-7; ENSG00000231671; RP11-157N3.1; ENSG00000231671.1; OTTHUMG00000010834.1; LINC01307


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -452.5791 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01307:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-S1PR1-2:1
3.1 lnc-S1PR1-3:1
4.0 LINC01307:3
4.1 LINC01307:3
5.0 LINC01307:3
5.1 LINC01307:3
5.2 LINC01307:3