Transcript: LINC01310:1

Basic information

LNCipedia transcript ID: LINC01310:1 
HGNC Gene Symbol: LINC01310    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1310
Ensembl Gene ID: ENSG00000205632
Ensembl Transcript ID: ENST00000380981
RefSeq ID: NR_038944
Location (hg38): chr22:48866770-48898386
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4015 bp
Exons: 7
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT087389; NR_038944; ENST00000380981.3; NR_038944.1
Alternative gene names: ENSG00000205632.3; LINC01310; WI2-81516E3.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.3701 non-coding 
CPAT coding probability 38.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01310:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM19A5-3:3
4.0 LINC01310:1
4.1 LINC01310:1
5.0 LINC01310:1
5.1 LINC01310:1
5.2 LINC01310:1