Transcript: LINC01312:1

Basic information

LNCipedia transcript ID: LINC01312:1 
HGNC Gene Symbol: LINC01312    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1312
Ensembl Gene ID: ENSG00000223586
Ensembl Transcript ID: ENST00000456347
Location (hg38): chr6:133821147-133851288
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 813 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456347; ENST00000456347.1; RP4-662A9.2-001; OTTHUMT00000042289.1; ENST00000456347.5
Alternative gene names: ENSG00000223586; RP4-662A9.2; ENSG00000223586.1; OTTHUMG00000015606.1; ENSG00000223586.5; LINC01312; MGC34034


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.0825 non-coding 
CPAT coding probability 66.39% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01312:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF21-1:1
3.1 lnc-TCF21-1:1
4.0 LINC01312:1
4.1 LINC01312:1
5.0 LINC01312:1
5.1 LINC01312:1
5.2 LINC01312:1